The synolog_cctl.py script allows the addition, update, or removal of species data files to the internal Synolog data cache.
synolog_cctl.py new --path path synolog_cctl.py species --path path [--id species_id] [--name NAME] [--common COMMON] synolog_cctl.py annotation --path path [--id species_id] [--ann-id ANNID] [--gtf GTF] [--gff GFF] [--agp AGP] [--symlink-only] [--replace] synolog_cctl.py genes --path path [--genes-id ANNID] [--aa AA] [--nuc NUC] [--symlink-only] [--replace] synolog_cctl.py integration --path path [--id species_id] [--genes-id genes_id] [--ann-id ann_id] [--desc description] [--rm] synolog_cctl.py list --path path
Core |
Species Cache |
Execution control |
Utility programs |