Pipeline Core
- synolog - This is the core Synolog program that detects conserved
synteny and assignes orthologs.
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Species Data Cache
- synolog_cctl.py - Add, update, or remove genome data from the
species data cache.
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- synolog_blastctl.py - run BLAST between species in the species data cache.
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- synolog_linkint.py - link BLAST runs between different species assemblies.
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Pipeline Execution
- synolog_run.py - executes Synolog on a particular subset of species from the stored data cache.
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Utility Programs
- synolog_fasta.py - export ortholog data in FASTA format for different downstream analyses.
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- synolog_info.py - view BLAST and ortholog data from a particular Synolog run.
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- synolog_plot.py - plot conserved synteny between species.
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