RADinitio 1.2.1 - 2023 Jun 26 ----------------------------- Bug Fix: Updated error in `setup.py` python version requirements. Others: Fixed typos and other small errors in the docs. RADinitio 1.2.0 - 2023 Jun 23 ----------------------------- Feature: Updated to `decoratio` PCR amplification models Feature: Updated reporting of RAD loci tally Feature: Several advanced options available in `radinitio` wrapper Bug Fix: Program now prints warning and stops when no sequences are loaded from genome. Other: General re-working and refactoring of main functions. Notes: Long overdue update! Finally had time to work on some very needed changes. RADinitio 1.1.1 - 2019 Sep 12 ----------------------------- Bug Fix: Fixed compatibility with updated version of `msprime` and `tskit` RADinitio 1.1.0 - 2019 Aug 06 ----------------------------- Feature: Added pipeline substage functions (`make-population`, `make-library-seq`, `tally-rad-loci`) Feature: Added log of dropped alleles when inserting variants. Bug Fix: Fixed report of insert sizes in various logs Bug Fix: Fixed error in `NlaIII` enzyme Other: msprime model generation now added as a function in `__init__` Other: Changed default value for template/read ratio in PCR model Other: Added `--version` flag in main wrapper. Also reported in other intermediary files. Other: General formatting updates to logs. RADinitio 1.0.3 - 2019 May 16 ----------------------------- Fixed bug when reporting number of loci in log Changed the requierements of the output directory - it now MUST exist RADinitio 1.0.2 - 2019 May 13 ----------------------------- Updated contents of package distribution build. RADinitio 1.0.1 - 2019 May 13 ----------------------------- FASTA parser now handles empty lines and comments. Program reports when non-canonical characters are present in the genome. RADinitio 1.0.0 - 2019 May 08 ----------------------------- First public release of RADinitio.