Klumpy 1.1.1 - 2025 Sep 15 ----------------------------- Fixed random sampling for newer versions of python Klumpy 1.1.0 - 2025 Feb 07 ----------------------------- Bug Fix: `klumpy` now looks for `*.csi` indices when no `.bai` indices are found Klumpy 1.0.11 - 2024 Dec 03 ----------------------------- Bug Fix: Fixed an issue when calling a variable before declaration in `scan_alignments` Other: Updated the README.md Klumpy 1.0.10 - 2024 Oct 09 ----------------------------- Bug Fix: Fixed an issue when evaluating untrustworthy alignments in the grouping algorithm Klumpy 1.0.9 - 2024 Oct 03 ----------------------------- Other: `find_klumps` now uses less memory by only keeping query k-mers in memory Klumpy 1.0.8 - 2024 Sep 30 ----------------------------- Other: Made clarifications in README.md Klumpy 1.0.7 - 2024 Sep 5 ----------------------------- Bug Fix: Fixed an issue where commented lines in klump tsv files were not ignored Klumpy 1.0.6 - 2024 May 27 ------------------------------ Other: Grouping algorithm improved by being more liberal with agreeing alignments Klumpy 1.0.5 - 2024 Feb 26 ----------------------------- Bug Fix: Version information is now properly added Klumpy 1.0.4 - 2024 Feb 21 ----------------------------- Other: Fixed typos in help Klumpy 1.0.3 - 2024 Feb 20 ----------------------------- Other: Improved k-mer comparisons in `find_klumps` by using a single hashtable Klumpy 1.0.2 - 2024 Feb 13 ----------------------------- Other: Fixed typos in help Klumpy 1.0.1 - 2024 Feb 13 ----------------------------- Other: Rearranged files within the Klumpy suite Klumpy 1.0.0 - 2024 Feb 02 ----------------------------- First public release of Klumpy.