#!/bin/bash src=$HOME/tutorial db=tut_radtags batch_id=1 date=2010-11-30 desc="Tutorial cross Genetic Map RAD-Tag Samples; m=3, n=4 Fuzzy Catalog matching, 4 snps allowed per individual" nice -n 19 denovo_map.pl -m 3 -M 4 -n 4 -B $db -b $batch_id -T 15 -t -a $date -D "$desc" \ -o $src/stacks \ -p $src/samples/f0_male.fq \ -p $src/samples/fa_female.fq \ -r $src/samples/progeny_01.fq \ -r $src/samples/progeny_02.fq \ -r $src/samples/progeny_03.fq