#!/bin/bash src=$HOME/tutorial # # Sequencing the parents and first three progeny from the cross. # process_radtags -p $src/raw/ -o $src/samples/ -b $src/barcodes -c -q -r mv $src/samples/process_radtags.log $src/samples/nov_30_2010_lane1.log mv $src/samples/sample_CGATA.fq $src/samples/f0_male.fq mv $src/samples/sample_GAAGC.fq $src/samples/f0_female.fq mv $src/samples/sample_TGACC.fq $src/samples/progeny_01.fq mv $src/samples/sample_AACCC.fq $src/samples/progeny_02.fq mv $src/samples/sample_ACTGC.fq $src/samples/progeny_03.fq