body {
    font-family: arial, sans;
}

img {
    border: none;
}

a:link { 
    text-decoration: none;
    color: #29356c; 
}

a:visited { 
    text-decoration: none;
    color: #29356c; 
}

a:hover { 
    text-decoration: underline;
    color: #a93535; 
}

div.head {
    margin-left: auto;
    margin-right: auto;
    text-align: center;
}

p.intro {
    text-indent: 2em;
    font-size: 14pt;
    margin-left: auto;
    margin-right: auto;
    width: 50%;
}

div.download {
    width: 25%;
    margin-left: auto;
    margin-right: auto;
    background-color: #eeeeee;
    border: 2px solid #f8a848;
    text-align: center;
    padding: 2em;
    padding-top: 1em;
    margin-top: 2em;
    margin-bottom: 4em;

    -moz-box-shadow: 4px 4px 7px #888;
    -webkit-box-shadow: 4px 4px 7px #888;
    box-shadow: 4px 4px 7px #888;
    -moz-border-radius: 10px;
    -webkit-border-radius: 10px;
    border-radius: 10px;
}

div.download:hover {
    border-color: #4e9a06;
    cursor: pointer;
}

div.download h3 {
    margin-top: 0px;
    margin-left: auto;
    margin-right: auto;
    font-size: 18pt;
    color: #4e9a06;
}

div.download img {
    border: 0;
    float: left;
}

div.nugget {
    margin-top: 2em;
    margin-bottom: 2em;
    margin-left: auto;
    margin-right: auto;
    width: 70%;
}

div.nugget h2 {
    display: block;
    border-bottom: 2px solid #888888;
}

div.nugget ul {

}

div.nugget ul li {
    list-style-type: none;
    padding-bottom: 1em;
}

div.nugget ul.disclist {
    list-style-type: disc;
}

div.nugget ul.disclist li {
    list-style-type: disc;
    padding-bottom: 0em;
}

div.nugget ul.spacedlist {
    list-style-type: disc;
}

div.nugget ul.spacedlist li {
    list-style-type: disc;
    margin-bottom: 0.5em;
}

div.nugget ol.spacedlist li {
    margin-bottom: 0.5em;
}

span.name {
    font-weight: bold;
    font-style: italic;
    font-size: larger;
    color: #4e9a06;
}

span.prog {
    font-family: monospace;
    font-weight: bold;
    font-size: larger;
    color: #4e9a06;
}

p.footnote {
    clear: both;
    font-size: small;
}

table.ss {
    margin-left: auto;
    margin-right: auto;
    height: 250px;
}

table.ss img#ss {
    width: 400px; 
    border: 2px solid #f8a848;
    padding: 5px;
    -moz-border-radius: 10px;
    -webkit-border-radius: 10px;
    border-radius: 10px;
    -moz-box-shadow: 4px 4px 7px #888;
    -webkit-box-shadow: 4px 4px 7px #888;
    box-shadow: 4px 4px 7px #888;
}

table.ss img#ss:hover {
    cursor: pointer;
}

table.ss td.right {
    width: 35px;
    background-image: url(images/arrow-r-bg.png);
    background-repeat: no-repeat;
    background-position: center center;
}

table.ss td.right:hover {
    background-image: url(images/arrow-r.png);
    background-repeat: no-repeat;
    background-position: center center;
}

table.ss td.left {
    width: 35px;
    background-image: url(images/arrow-l-bg.png);
    background-repeat: no-repeat;
    background-position: center center;
}

table.ss td.left:hover {
    background-image: url(images/arrow-l.png);
    background-repeat: no-repeat;
    background-position: center center;
}

p.code {
    background-color: #eeeeee;
    padding: 1em;
    font-family: monospace;
    white-space: pre;
    border-radius: 5px;
}

p.code span.dir {
    color: #492ee1;
    font-weight: bold;
}

p.code span.exe {
    color: #25bc24;
    font-weight: bold;
}

span.code {
    background-color: #eeeeee;
    font-family: monospace;
}

span.code_comment {
    color: #59a052;
}

span.code_shbang {
    color: #cc2229;
}

p.img_caption {
    text-align: justify;
    font-size: smaller;
}

table.sample_list {
    width: 250px;
    text-align: center;
    font-family: monospace;
}

table.param_list {
    width: 90%;
    font-weight: normal;
    font-size: smaller;
}

table.param_list td {
    padding-bottom: 1em;
}

table.param_list td.l {
    width: 10%;
    text-align: center;
    font-family: monospace;
    padding-top: 6px;
    vertical-align: top;
}

table.param_list td.r {
    text-align: left;
}

ol.tut_list {
    font-size: larger;
    font-weight: bold;
}

ol.tut_list p {
    font-size: smaller;
    font-weight: normal;
}

img.tut_img {
    margin-left: -2em;
    border: 2px solid #f8a848;
    padding: 5px;
    -moz-border-radius: 10px;
    -webkit-border-radius: 10px;
    border-radius: 10px;
    -moz-box-shadow: 4px 4px 7px #888;
    -webkit-box-shadow: 4px 4px 7px #888;
    box-shadow: 4px 4px 7px #888;
}

div#tut_3 {
    margin-left: 0.5em;
    width: 900px;
    height: 588px;
    position: relative;
}

div#tut_3 div {
    -moz-border-radius: 10px;
    -webkit-border-radius: 10px;
    border-radius: 10px;
    border: 4px solid #f8a848;
}

div#tut_3_filters {
    position: absolute;
    top: 40px; 
    left: 75px;
    width: 650px; 
    height: 120px;
}

div#tut_3_filters:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div#tut_3_alleles {
    position: absolute;
    top: 258px; 
    left: 10px;
    width: 60px; 
    height: 45px;
}

div#tut_3_alleles:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div#tut_3_gtypes {
    position: absolute;
    top: 255px; 
    left: 745px;
    width: 85px; 
    height: 50px;
}

div#tut_3_gtypes:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div#tut_3_export {
    position: absolute;
    top: 160px; 
    left: 765px;
    width: 75px; 
    height: 55px;
}

div#tut_3_export:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div#tut_3_annot {
    position: absolute;
    top: 474px; 
    left: 12px;
    width: 51px; 
    height: 35px;
}

div#tut_3_annot:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div#tut_3_imgs, div#pe_tut_imgs, div#ss_imgs {
    position: absolute;
    display: none;
    z-index: 100;
    border: 5px solid #4e9a06;
    background-color: #fff;
    -moz-box-shadow: 4px 4px 7px #888;
    -webkit-box-shadow: 4px 4px 7px #888;
    box-shadow: 4px 4px 7px #888;
}

div#tut_3_imgs, div#pe_tut_imgs p.caption {
    display: none;
    width: 90%;
    padding-left: 5%;
    padding-right: 5%;
    background-color: #eeeeee;
    padding-top: 1em;
    padding-bottom: 1em;
    border-top: 4px solid #f8a848;
    margin-bottom: 0px;
}

p#tut_close {
    width: 97%;
    margin-top: 0;
    margin-bottom: 0;
    padding-top: 0.5em;
    padding-bottom: 0.5em;
    padding-right: 3%;
    text-align: right;
    font-weight: bold;
    background-color: #eeeeee;
}

p#tut_close a:hover {
    text-decoration: underline;
    cursor: pointer;
}

div#tut_3_imgs, div#pe_tut_imgs img {
    clear: both;
}

div#preload {
    display: none;
}

span.s {
    font-size: smaller;
}

div.prog_opts {
    font-family: monospace;
}

p.synopsis {
    line-height: 1.2em;
    padding-bottom: 1em;
}

span.synopsis {
    white-space: pre;
}

div.prog_opts ul {
}

div.prog_opts li {
    margin-left: 3em;
    text-indent: -3em;
}

div.prog_opts span.opt {
    padding-right: 1em;
    font-weight: bold;
}

div.prog_opts span.opt_long {
    font-weight: bold;
}

div.prog_opts h3 {
    margin-top: -1em;
    color: #4e9a06;
    padding-left: 1.5em;
    font-weight: bold;
    font-size: 10pt;
}

div.prog_opts h4 {
    margin-top: -1em;
    margin-bottom: -0.5em;
    color: #4e9a06;
    padding-left: 2.25em;
    font-weight: bold;
    font-size: 10pt;
}

div.recent {
    margin-top: -3em;
    margin-left: auto;
    margin-right: auto;
    width: 60%;
    text-align: center;
}

div.recent h5:hover {
    text-decoration: underline;
    cursor: pointer;
    color: #a93535; 
}

iframe#recent_changes {
    width: 100%;
}

div.changelog {
    font-size: smaller;
    white-space: pre-wrap;
    font-family: monospace;
}

table.fields {
    border: solid thin #888888;
    border-collapse: collapse;
    width: 100%;
}

table.fields td,
table.fields th {
    border: solid thin #888888;
    padding: 3px;
}

table.fields th.title {
    font-size: larger;
    text-align: left;
    padding: 3px;
    background-color: #dddddd;
}

table.fields td.notes {
    border: none;
    padding: 1em;
}

div#pe_tut {
    margin-left: 0.5em;
    padding-bottom: 1em;
    width: 900px;
    height: 913px;
    position: relative;
}

div#pe_tut div {
    -moz-border-radius: 10px;
    -webkit-border-radius: 10px;
    border-radius: 10px;
    border: 4px solid #f8a848;
}

div#pe_tut_filter {
    position: absolute;
    top: 310px; 
    left: 90px;
    width: 650px; 
    height: 70px;
}

div#pe_tut_filter:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div#pe_tut_ctg {
    position: absolute;
    top: 480px; 
    right: 55px;
    width: 90px; 
    height: 75px;
}

div#pe_tut_ctg:hover {
    border: 4px solid #4e9a06;
    cursor: pointer;
}

div.feature {
    width: 85%;
    margin-left: auto;
    margin-right: auto;
    background-color: #eeeeee;
    border: 2px solid #f8a848;
    padding: 1em;
    margin-top: 1em;
    margin-bottom: 1em;
    vertical-align: top;
    clear: both;

    box-shadow: 4px 4px 7px #888;
    border-radius: 10px;
}

div.feature:hover {
    border-color: #4e9a06;
 }

div.feature img {
    float: left;
}

div.feature h3 {
    margin-top: 0;
    margin-bottom: 0.5em;
    margin-left: 50px;
    font-size: 18pt;
    color: #4e9a06; 
}

div.feature p {
    margin-top: 0;
    margin-left: 50px;
    font-size: 11pt;
}

h3.comp {
    font-size: 16pt;
    text-indent: 1em;
    margin-bottom: 0;
}

p.comp {
    margin-left: 1.5em;
    width: 95%
}

table.comp {
    margin-top: 0;
    margin-left: 1em;
    margin-right: 1em;
    width: 95%;
}

table.comp td {
    vertical-align: top;
    padding: 1em;
    padding-top: 0;
    padding-bottom: 0;
    width: 25%;
}

table.comp h4 {
    color: #4e9a06;
    margin-bottom: -0.75em;
    font-style: italic;
    font-weight: normal;
}

table.comp ul {
    background-color: #eeeeee;
    border: 1px solid #4e9a06;
    padding: 0.5em;
    padding-left: 1.5em;
    margin-top: 0.5em;
}

table.comp li {
    font-size: 12pt;
    font-family: monospace;
    margin-bottom: -.5em;
}

div.manual ul.comp li {
    list-style-type: none;
}

div.docbubble {
    font-size: 10pt;
    padding: 0.5em;
    width: 300px;
    min-height: 80px;
    background-color: #eee;
    border: 2px solid #f8a848;
    position: absolute;
    border-radius: 10px;
    box-shadow: 4px 4px 8px #333;
} 

div.docbubble:before { 
    content: ""; 
    position: absolute; 
    right: 100%; 
    top: 13px; 
    width: 0; 
    height: 0; 
    border-top: 13px solid transparent; 
    border-right: 26px solid #f8a848; 
    border-bottom: 13px solid transparent; 
}

div.docbubble span.prog {
    font-size: 11pt;
}

div.docbubbleR {
    font-size: 10pt;
    padding: 0.5em;
    width: 300px;
    min-height: 80px;
    background-color: #eee;
    border: 2px solid #f8a848;
    position: absolute;
    border-radius: 10px;
    box-shadow: 4px 4px 8px #333;
} 

div.docbubbleR span.prog {
    font-size: 11pt;
}

div.docbubbleR:before { 
    content: ""; 
    position: absolute; 
    left: 100%; 
    top: 13px; 
    width: 0; 
    height: 0; 
    border-top: 13px solid transparent; 
    border-left: 26px solid #f8a848; 
    border-bottom: 13px solid transparent; 
}

table.param {
    width: 65%;
    margin-left: auto;
    margin-right: auto;
    border-collapse: collapse;
    border: 1px solid #000;
    margin-top: 2em;
    margin-bottom: 2em;
}

table.param th {
    background-color: #eeeeee;
}

table.param td {
    border: 1px solid #000;
    text-align: center;
}

span.inline_bc {
    font-weight: bold;
    color: #a93535;
}

span.index_bc {
    font-weight: bold;
    color: #29356c;
}

div.manual {
    width: 8.5in;
    margin-left: auto;
    margin-right: auto;
}

div.manual span.top_link {
    font-size: 10pt;
    font-weight: normal;
    color: #888;
}

div.man_img {
    margin: 0.5em; 
    padding: 0.5em; 
    border: 2px solid #888;
    text-align: center;
}

img.man_img {
    width: 100%;
    margin-left: auto;
    margin-right: auto;
}

p.man_img_caption {
    margin-left: -0.6em;
    margin-right: -0.6em;
    padding-left: 0.6em;
    padding-right: 0.6em;
    border-top: 2px solid #888;
    text-align: justify;
    font-size: smaller;
}

div.manual p.code {
    font-size: smaller;
}

div.manual ul li {
    list-style-type: disc;
}

/* Create sublists e.g., 1, 2, 2.1, 2.2, 3, etc. */
div.manual_toc,
div.manual_body {
    counter-reset: section; 
}

ol.sections {
    padding-left: 0px;
    list-style-type: none;
}

ol.subsections {
    padding-left: 2em;
    list-style-type: none;
}

ol.subsubsections {
    padding-left: 2em;
    list-style-type: none;
}

ol.subsubsubsections {
    padding-left: 2em;
    list-style-type: none;
}

ol.sections li { 
    counter-increment: section; 
    counter-reset: subsection; 
}

ol.subsections li { 
    counter-increment: subsection; 
    counter-reset: none; 
}

ol.subsubsections li { 
    counter-increment: subsubsection; 
    counter-reset: none; 
}

ol.subsubsubsections li { 
    counter-increment: subsubsubsection; 
    counter-reset: none; 
}

ol.sections li:before { 
    content: counter(section) "."; 
    display: block; 
    float: left;
    width: 1em;
}

ol.sections ol.subsections li:before { 
    content: counter(section) "." counter(subsection) ".";
    width: 2em;
}

ol.sections ol.subsections ol.subsubsections li:before { 
    content: counter(section) "." counter(subsection) "." counter(subsubsection) ".";
    width: 3em;
}

ol.sections ol.subsections ol.subsubsections ol.subsubsubsections li:before { 
    content: counter(section) "." counter(subsection) "." counter(subsubsection) "." counter(subsubsubsection) ".";
    width: 3.5em;
}

h2.title {
    font-size: 32pt;
    font-family: 'Hind', sans-serif;
    line-height: 0.75;
}

h3.sections { 
    font-size: 24pt;
    font-family: 'Hind', sans-serif;
    counter-increment: section; 
    counter-reset: subsection; 
}

h4.subsections { 
    font-size: 16pt;
    counter-increment: subsection; 
    counter-reset: subsubsection;
}

h5.subsubsections { 
    font-size: 14pt;
    counter-increment: subsubsection; 
    counter-reset: subsubsubsection;
}

h5.subsubsubsections { 
    font-size: 12pt;
    counter-increment: subsubsubsection; 
    counter-reset: none;
}

h3.sections:before { 
    content: counter(section) "."; 
    display: block; 
    float: left;
    width: 1.25em;
}

h4.subsections:before { 
    content: counter(section) "." counter(subsection) ".";
    float: left;
    width: 2.25em;
}

h5.subsubsections:before { 
    content: counter(section) "." counter(subsection) "." counter(subsubsection);
    float: left;
    width: 3.25em;
}

h5.subsubsubsections:before { 
    content: counter(section) "." counter(subsection) "." counter(subsubsection) "." counter(subsubsubsection);
    float: left;
    width: 3.5em;
}

img.manual {
    box-shadow: 4px 4px 7px #888;
}

div.infobox {
    border: 2px solid #f8a848;
    border-radius: 10px;
    padding-left: 1em;
    padding-right: 1em;
    background-color: #81bee7;
    color: #fff;
}

p.noncap_img {
    text-align: center;
}

p.noncap_img img {
    width: 600px;
}

ol.manual li {
    margin-bottom: 1.0em;
}

section.manual_section {
    margin-bottom: 350px;
}

hr.manual {
    width: 100%; 
    height: 0px;
    border: 1px solid #59a052;
    margin-top: -2em;
    margin-bottom: 2.5em;
    position: relative;
    box-shadow: 2px 2px 5px #aaa;
}

hr.manual:after {
    content: "";
    width: 14px; 
    height: 14px;
    background-color: #59a052;
    border-radius: 7px;
    position: absolute;
    top: -7px;
    right: -1px;
}

/*
hr.section_end {
    padding: 0;
    border: none;
    border-top: medium double #59a052;
    color: #333;
    text-align: center;
    margin-top: 2em;
    width: 50%;
    margin-left: auto;
    margin-right: auto;
    box-shadow: 2px 2px 5px #aaa;
}

hr.section_end:after {
    content: "§";
    display: inline-block;
    position: relative; 
    top: -0.7em;  
    font-size: 1.5em;
    padding: 0 0.25em;
    color: #59a052;
}
*/

hr.section_end {
    width: 50%; 
    height: 0px;
    border: 1px solid #59a052;
    margin-top: 2em;
    margin-bottom: 2.5em;
    position: relative;
    box-shadow: 2px 2px 5px #aaa;
}

hr.section_end:after {
    content: "";
    position: absolute;
    top:   -8px;
    right:  50%;
    width:  0; 
    height: 0; 
    border-left:    7px solid transparent; 
    border-right:   7px solid transparent; 
    border-bottom: 14px solid #59a052;
}

p.highlight {
    border: 1px solid black;
    border-radius: 10px;
    background-color: #dcebcd;
    padding: 0.5em;
}

span.prompt {
    color: #4f3edd;
    user-select: none;
    -moz-user-select: none;
    -webkit-user-select: none;
    -ms-user-select: none;
}