Stacks

load_radtags.pl

load_radtags.pl takes a set of data produced by either the denovo_map.pl or ref_map.pl programs (or produced by hand) and loads it into the database. This allows the data to be generated on one computer, but loaded from another. Or, for a database to be regenerated without re-executing the pipeline.

Program Options

load_radtags.pl -D db -p path -b batch_id [-B -e desc] [-c] [-M pop_map] [-d] [-t] [-W path] [-U] [-d] [-h]

Example Usage

% load_radtags.pl -D redsea_radtags -b 1 -p ~/redseq_experiment/stacks/ -B -e "This is our Red Sea Experiment; M:4,m:3,n:2" -c

Other Pipeline Programs

Raw Reads

Core

Execution control

Utilities