Stacks

index_radtags.pl

This program indexes the database to speed execution of the web interface after all of the data has been loaded. It moves a large amount of summary data (such as the number of alleles, SNPs, mappable progeny, among other things) into an index table to enable filtering and exporting of the data.

Program Options

index_radtags.pl -D db [-c] [-t] [-s path] [-d] [-h]

Example Usage

% index_radtags.pl -D pe_radtags -c

Other Pipeline Programs

Raw Reads

Core

Execution control

Utilities